EPIBLASTER-fast exhaustive two-locus epistasis detection strategy using graphical processing units
نویسندگان
چکیده
منابع مشابه
Epistasis detection on quantitative phenotypes by exhaustive enumeration using GPUs
MOTIVATION In recent years, numerous genome-wide association studies have been conducted to identify genetic makeup that explains phenotypic differences observed in human population. Analytical tests on single loci are readily available and embedded in common genome analysis software toolset. The search for significant epistasis (gene-gene interactions) still poses as a computational challenge ...
متن کاملGeneral-purpose Computation Using Graphical Processing Units
Graphical Processing Units (GPU) are mainly developed to process intense graphical operations. This has been the purpose for many years; however recent advancements in the architecture of GPUs and how they process data have led to a breakthrough in how we are able to process information. General Purpose Computation using GPUs is a new method of processing information using a GPU and its many pr...
متن کاملGPUBwa -Parallelization of Burrows Wheeler Aligner using Graphical Processing Units
A very popular discipline in bioinformatics is Next-Generation Sequencing (NGS) or DNA sequencing. It specifies sequencing methods for determining the order of nucleotide bases; adenine, guanine, cytosine and thymine in a molecule of DNA which is then assembled for analysis. A central challenge in DNA sequencing is sequence alignment, whereby fragments of much longer DNA sequence are aligned an...
متن کاملQuantum Monte Carlo on graphical processing units
Quantum Monte Carlo (QMC) is among the most accurate methods for solving the time independent Schrödinger equation. Unfortunately, the method is very expensive and requires a vast array of computing resources in order to obtain results of a reasonable convergence level. On the other hand, the method is not only easily parallelizable across CPU clusters, but as we report here, it also has a high...
متن کاملFast Face Recognition Approach Using a Graphical Processing Unit ”GPU”
In this manuscript, we present an implementation of a correlation method for face recognition application on GPU. Our correlator is based on the famous ”4f” setup and the use of a Phase Only Filter (POF). Traditionally, the correlation approach is implemented using optical components for real-time application. Unfortunately, optical implementation is complex and has exorbitant price. To cope wi...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: European Journal of Human Genetics
سال: 2010
ISSN: 1018-4813,1476-5438
DOI: 10.1038/ejhg.2010.196